Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Cardiovascular

Cell type

Heart Ventricles

MeSH Description

The lower right and left chambers of the heart. The right ventricle pumps venous BLOOD into the LUNGS and the left ventricle pumps oxygenated blood into the systemic arterial circulation.

Sample

tissue

heart right ventricle

sample type

tissue

sex

male

health state

ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

dev stage

adult

age

66 year

donor ID

ENCDO926KEV

lab

Bradley Bernstein, Broad

source

Shin Lin

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

23572472

Reads aligned (%)

98.7

Duplicates removed (%)

8.2

Number of peaks

30734 (qval < 1E-05)

hg19

Number of total reads

23572472

Reads aligned (%)

97.9

Duplicates removed (%)

9.1

Number of peaks

30576 (qval < 1E-05)